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  5. Sro308_g113620.1

Sro308_g113620.1 (Contig2352.g19332)


Aliases : Contig2352.g19332

Description : Polymerase II subunit RPB2


Gene families : OG_01_0002526 (OrthoFinder) Phylogenetic Tree(s): OG0002526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro308_g113620.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
Cz07g31260.t1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... 0.04 OrthoFinder
Dusal.0568s00004.1 33200266 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.02 OrthoFinder
OT_01G06160.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.04 OrthoFinder
TP01G04670.1 No alias RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2,... 0.03 OrthoFinder
Vocar.0007s0095.1 32888310 RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2,... 0.02 OrthoFinder
XM_003062758.1 MicpuC2_22087, 22087 RNA polymerase Rpb2, domain 2; RNA polymerase, beta... 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496235.1_2233 KAA8496235 DNA-directed RNA polymerase III subunit RPC2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 677 740
IPR007120 DNA-dir_RNAP_su2_dom 927 1316
IPR007642 RNA_pol_Rpb2_2 420 601
IPR007644 RNA_pol_bsu_protrusion 271 651
IPR007641 RNA_pol_Rpb2_7 1318 1402
IPR007646 RNA_pol_Rpb2_4 779 841
IPR007647 RNA_pol_Rpb2_5 865 918
No external refs found!