Sro305_g112730.1 (Contig560.g7114)

Aliases : Contig560.g7114

Description : Polyubiquitin (Fragment)

Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro305_g112730.1
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00022075.50	tig00022075_g23611.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder
Cre01.g007051	30788581	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder
Cre06.g273600	30779902, RPS27a	Protein biosynthesis.cytosolic ribosome.small subunit...	0.58	OrthoFinder
Cz09g22150.t1	No alias	Ribosomal protein S27a [Interproscan].	0.47	OrthoFinder
Cz11g28020.t1	No alias	Ubiquitin-like domain [Interproscan].	0.04	OrthoFinder
Cz13g16210.t1	No alias	Ubiquitin-like domain [Interproscan].	0.12	OrthoFinder
Dusal.0222s00011.1	33201848	Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].	0.17	OrthoFinder
Dusal.0519s00002.1	33200370	Ubiquitin-like domain [Interproscan].	0.03	OrthoFinder
Dusal.0808s00008.1	33188936	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.05	OrthoFinder
EOD24536	No alias	Ribosomal protein L41; Ubiquitin-like domain [Interproscan].	0.14	OrthoFinder
EOD32212	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.24	OrthoFinder
EOD34096	No alias	Ribosomal protein L41; Ubiquitin-like domain [Interproscan].	0.14	OrthoFinder
OT_07G00910.1	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.21	OrthoFinder
OT_08G01740.1	No alias	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.29	OrthoFinder
PTI_07G02070.1	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.36	OrthoFinder
TP05G02210.1	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.36	OrthoFinder
Vocar.0002s0346.1	32890766	Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].	0.23	OrthoFinder
Vocar.0009s0373.1	32893174	Ubiquitin-like domain [Interproscan].	0.03	OrthoFinder
Vocar.0024s0156.1	32890529	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.13	OrthoFinder
Vocar.0031s0093.1	32890066	Ubiquitin-like domain [Interproscan].	0.04	OrthoFinder
XM_002501154.1	MICPUN_90428, 90428	Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].	0.45	OrthoFinder
XM_002503017.1	MICPUN_82590, 82590	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.25	OrthoFinder
XM_003054911.1	MicpuC2_50207, 50207	Ubiquitin-like domain [Interproscan].	0.02	OrthoFinder
XM_003058637.1	MicpuC2_17541, 17541	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.15	OrthoFinder
XM_003062233.1	MicpuC2_51948, 51948	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.01	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60289.1_4387	PRW60289	Ubiquitin-40S ribosomal S27a	0.21	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56465.1_9834	PRW56465	Ubiquitin-60S ribosomal L40	0.16	OrthoFinder
lcl\|LHPG02000010.1_cds_PRW50795.1_938	PRW50795	Polyubiquitin 3 isoform B	0.01	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497057.1_786	KAA8497057	Ubiquitin-like protein 1-40S ribosomal protein S27a	0.25	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493558.1_4320	KAA8493558	Ubiquitin-60S ribosomal protein L40-2	0.24	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004664	prephenate dehydratase activity	IEP	Enrichment
MF	GO:0004665	prephenate dehydrogenase (NADP+) activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006534	cysteine metabolic process	IEP	Enrichment
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Enrichment
BP	GO:0006570	tyrosine metabolic process	IEP	Enrichment
BP	GO:0006571	tyrosine biosynthetic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
MF	GO:0008977	prephenate dehydrogenase (NAD+) activity	IEP	Enrichment
BP	GO:0009069	serine family amino acid metabolic process	IEP	Enrichment
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Enrichment
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Enrichment
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Enrichment
MF	GO:0016836	hydro-lyase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Enrichment
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Enrichment
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Enrichment
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR002906	Ribosomal_S27a	103	145

External Links

No external refs found!

Sro305_g112730.1 (Contig560.g7114)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation