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  5. Sro29_g019150.1

Sro29_g019150.1 (Contig1384.g12758)


Aliases : Contig1384.g12758

Description : CHD3-type chromatin-remodeling factor CHR7


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro29_g019150.1
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000128.11 tig00000128_g7211.t1 ISWI chromatin-remodeling complex ATPase CHR17... 0.01 OrthoFinder
Cre03.g158550 30787160 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cre16.g687301 30777125 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder
Cz03g32130.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD17057 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.03 OrthoFinder
EOD23118 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD27153 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD28310 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.03 OrthoFinder
EOD31071 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
EOD38452 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD41894 No alias SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
EOD41956 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
OT_09G01120.1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
OT_12G02840.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
PTI_10G00070.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.03 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
PTI_24G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
TP12G03300.1 No alias SNF2-related, N-terminal domain; Chromo domain;... 0.02 OrthoFinder
Vocar.0019s0100.1 32892722 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.03 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.03 OrthoFinder
XM_002503134.1 MICPUN_59225, 59225 SNF2 super family 0.02 OrthoFinder
XM_002506691.1 MICPUN_64845, 64845 SNF2 super family 0.02 OrthoFinder
XM_002509111.1 MICPUN_62843, 62843 SNF2 super family 0.03 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13581.1_8058 HaLaN_09499, GFH13581 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003363.1_cds_GFH27140.1_21617 HaLaN_25412, GFH27140 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003474.1_cds_GFH27437.1_21914 HaLaN_25757, GFH27437 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61596.1_539 PRW61596 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33099.1_3518 PRW33099 SNF2 family DNA-dependent ATPase 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1629 1740
IPR000330 SNF2_N 1298 1583
IPR009071 HMG_box_dom 362 426
IPR001487 Bromodomain 2223 2293
IPR001487 Bromodomain 445 526
IPR001487 Bromodomain 2558 2638
IPR023780 Chromo_domain 642 682
No external refs found!