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  5. Sro2925_g340380.2

Sro2925_g340380.2


Description : Rieske [2Fe-2S] iron-sulphur domain; Pheophorbide a oxygenase [Interproscan].


Gene families : OG_01_0000145 (OrthoFinder) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2925_g340380.2
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000681.17 tig00000681_g3064.t1 Protein TIC 55, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre13.g583050 30784306 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre17.g724700 30782195, PAO1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD18184 No alias Pheophorbide a oxygenase; Rieske [2Fe-2S] iron-sulphur... 0.02 OrthoFinder
EOD42110 No alias Pheophorbide a oxygenase; Rieske [2Fe-2S] iron-sulphur... 0.02 OrthoFinder
Transcript_contig_89322 89322 Rieske [2Fe-2S] iron-sulphur domain; Pheophorbide a... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEA Interproscan
MF GO:0051537 2 iron, 2 sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013626 PaO 334 436
IPR017941 Rieske_2Fe-2S 102 192
No external refs found!