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  5. Sro2900_g339760.1

Sro2900_g339760.1 (Contig1521.g13881)


Aliases : Contig1521.g13881

Description : Receptor subunit 1


Gene families : OG_01_0000795 (OrthoFinder) Phylogenetic Tree(s): OG0000795_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2900_g339760.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Sro1333_g263630.1 Contig3364.g26362 Receptor subunit 1 0.04 OrthoFinder
Sro1418_g271020.1 Contig4752.g35218 Receptor ionotropic, NMDA 1 0.03 OrthoFinder
Sro1647_g288410.1 Contig41.g287 Glutamate-gated receptor that probably acts as non-... 0.03 OrthoFinder
Sro1777_g296940.1 Contig3318.g26035 Receptor ionotropic, NMDA 1 0.04 OrthoFinder
Sro206_g086490.1 Contig4750.g35186 Ionotropic glutamate receptor [Interproscan]. 0.04 OrthoFinder
Sro217_g089690.1 Contig1718.g15343 NMDA receptor subtype of glutamate-gated ion channels... 0.03 OrthoFinder
Sro2372_g325250.1 Contig4676.g34743 Receptor subunit 1 0.03 OrthoFinder
Sro2372_g325260.1 Contig4676.g34744 Receptor subunit 1 0.03 OrthoFinder
Sro468_g149250.1 Contig3973.g30519 Hypothetical protein 0.08 OrthoFinder
Sro557_g166130.1 Contig1427.g13183 Receptor subunit 1 0.04 OrthoFinder
Sro62_g035330.1 Contig2718.g21914 Ionotropic glutamate receptor [Interproscan]. 0.05 OrthoFinder
Sro62_g035340.1 Contig2718.g21915 Ionotropic glutamate receptor [Interproscan]. 0.02 OrthoFinder
Sro990_g228610.1 Contig427.g5785 Receptor ionotropic, NMDA 1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Enrichment
MF GO:0004930 G protein-coupled receptor activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 198 444
No external refs found!