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  5. Sro279_g106690.1

Sro279_g106690.1 (Contig3140.g24908)


Aliases : Contig3140.g24908

Description : Protein L4


Gene families : OG_01_0001152 (OrthoFinder) Phylogenetic Tree(s): OG0001152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro279_g106690.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.35 tig00001003_g6290.t1 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.03 OrthoFinder
Cre11.g479500 30775927, PRPL4 Protein biosynthesis.organelle translation... 0.09 OrthoFinder
Cre12.g520400 30792302, MRPL4 No description available 0.06 OrthoFinder
Cz03g02040.t1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.06 OrthoFinder
Dusal.0131s00022.1 33186833 Ribosomal protein L4/L1e [Interproscan]. 0.01 OrthoFinder
Dusal.0246s00007.1 33197700 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
EOD32718 No alias Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
OT_11G01720.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.01 OrthoFinder
OT_16G00330.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.07 OrthoFinder
PTI_07G00540.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
Sro51_chlor_g029480.1 Rpl4 Rpl4 0.04 OrthoFinder
TPCG02350.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
Transcript_contig_54114 54114 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
Vocar.0048s0048.1 32893676 Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
XM_002503039.1 MICPUN_59033, 59033 Ribosomal protein L4/L1e [Interproscan]. 0.09 OrthoFinder
XM_003061053.1 MicpuC2_48008, 48008 Ribosomal protein L4/L1e [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01001390.1_cds_GFH19003.1_13480 HaLaN_15888, GFH19003 Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45732.1_1468 PRW45732 50S ribosomal L4 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495891.1_1889 KAA8495891 50S ribosomal protein L4 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
CC GO:0000313 organellar ribosome IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005761 mitochondrial ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 172 387
No external refs found!