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  5. Sro2726_g335660.1

Sro2726_g335660.1 (Contig3579.g27670)


Aliases : Contig3579.g27670

Description : Cryptochrome DASH


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2726_g335660.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000391.2 tig00000391_g24833.t1 DNA damage response.DNA repair... 0.04 OrthoFinder
Cpa|evm.model.tig00020965.69 tig00020965_g16882.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.06 OrthoFinder
Cpa|evm.model.tig00020965.70 tig00020965_g16882.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.07 OrthoFinder
Cpa|evm.model.tig00021012.26 tig00021012_g17007.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.02 OrthoFinder
Cpa|evm.model.tig00021579.19 tig00021579_g22443.t1 Cryptochrome-1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre01.g030650 30789664 Cryptochrome DASH, chloroplastic/mitochondrial... 0.01 OrthoFinder
Cre02.g078939 30785814 Cryptochrome DASH, chloroplastic/mitochondrial... 0.05 OrthoFinder
Cz09g17160.t1 No alias DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.02 OrthoFinder
Dusal.0183s00016.1 33202617 Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. 0.02 OrthoFinder
Dusal.0203s00017.1 33199258 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.01 OrthoFinder
EOD11134 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.05 OrthoFinder
EOD15451 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.06 OrthoFinder
EOD19626 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.02 OrthoFinder
EOD24687 No alias Deoxyribodipyrimidine photolyase/cryptochrome [Ensembl]. 0.02 OrthoFinder
OT_15G01070.1 No alias DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.03 OrthoFinder
PTI_05G04390.1 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.08 OrthoFinder
PTI_08G03200.1 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.03 OrthoFinder
Transcript_contig_56266 56266 DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.03 OrthoFinder
Transcript_contig_7429 7429 Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. 0.01 OrthoFinder
XM_002508739.1 MICPUN_61974, 61974 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.05 OrthoFinder
XM_003057723.1 MicpuC2_16082, 16082 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.02 OrthoFinder
XM_003061182.1 MicpuC2_19486, 19486 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.02 OrthoFinder
XM_003062934.1 MicpuC2_22169, 22169 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.01 OrthoFinder
lcl|BLLF01000049.1_cds_GFH06657.1_1134 HaLaN_01325, GFH06657 Photolyase/cryptochrome alpha/beta domain-containing protein 0.02 OrthoFinder
lcl|BLLF01001067.1_cds_GFH16890.1_11367 HaLaN_13407, GFH16890 Deoxyribodipyrimidine photo-lyase 0.02 OrthoFinder
lcl|BLLF01001533.1_cds_GFH19868.1_14345 HaLaN_16893, GFH19868 Photolyase/cryptochrome alpha/beta domain-containing protein 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496724.1_453 KAA8496724 Deoxyribodipyrimidine photo-lyase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 19 207
IPR005101 Cryptochr/Photolyase_FAD-bd 333 513
No external refs found!