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  5. Sro25_g017070.1

Sro25_g017070.1 (Contig1417.g13046)


Aliases : Contig1417.g13046

Description : Regulator of telomere elongation helicase 1


Gene families : OG_01_0000361 (OrthoFinder) Phylogenetic Tree(s): OG0000361_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro25_g017070.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Cre02.g089608 30785132 Regulator of telomere elongation helicase 1 homolog... 0.02 OrthoFinder
Cz01g29040.t1 No alias ATP-dependent helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
Cz02g00030.t1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
OT_04G00710.1 No alias ATP-dependent helicase, C-terminal; DNA polymerase... 0.04 OrthoFinder
OT_08G00240.1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
TP06G00720.1 No alias PDZ domain; Zinc finger, C3HC4 type (RING finger);... 0.03 OrthoFinder
Vocar.0001s1241.1 32885467 ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0190.1 32897132 ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
XM_002506345.1 MICPUN_88790, 88790 DEAD2; ATP-dependent helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
XM_002508845.1 MICPUN_85702, 85702 DEAD2; ATP-dependent helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
XM_003063818.1 MicpuC2_4429, 4429 ATP-dependent helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01004846.1_cds_GFH30349.1_24826 HaLaN_29184, GFH30349 Helicase ATP-binding domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494605.1_3135 KAA8494605 Fanconi anemia group J protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 1291 1496
IPR010614 DEAD_2 828 893
IPR010614 DEAD_2 426 499
IPR041489 PDZ_6 643 697
No external refs found!