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  5. Cpa|evm.model.tig00000219.1

Cpa|evm.model.tig00000219.1 (tig00000219_g19436.t1)


Aliases : tig00000219_g19436.t1

Description : RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase


Gene families : OG_01_0002563 (OrthoFinder) Phylogenetic Tree(s): OG0002563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000219.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_57846 57846 Hypothetical protein 0.02 OrthoFinder
Vocar.0004s0183.1 32889914 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment

No InterPro domains available for this sequence

No external refs found!