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  5. Sro2035_g312060.1

Sro2035_g312060.1 (Contig3136.g24894)


Aliases : Contig3136.g24894

Description : GLE1 RNA export mediator homolog (yeast)


Gene families : OG_01_0014975 (OrthoFinder) Phylogenetic Tree(s): OG0014975_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2035_g312060.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
PTI_01G05980.1 No alias E3 ligase, CCCH-type zinc finger; GLE1-like [Interproscan]. 0.02 OrthoFinder
TP17G01570.1 No alias E3 ligase, CCCH-type zinc finger; GLE1-like [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494917.1_3447 KAA8494917 E3 ligase, CCCH-type zinc finger [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0016973 poly(A)+ mRNA export from nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0045132 meiotic chromosome segregation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
BP GO:0098813 nuclear chromosome segregation IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1903046 meiotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR012476 GLE1 322 582
IPR041367 Znf-CCCH_4 998 1018
No external refs found!