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  5. Sro19_g013190.1

Sro19_g013190.1 (Contig446.g5983)


Aliases : Contig446.g5983

Description : CHD3-type chromatin-remodeling factor


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro19_g013190.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.25 tig00000217_g19158.t1 Chromatin structure-remodeling complex protein SYD... 0.01 OrthoFinder
Cpa|evm.model.tig00021623.13 tig00021623_g23013.t1 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder
Cz05g37180.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder
Dusal.0001s00013.1 33198814 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.01 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Dusal.0357s00004.1 33189829 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.01 OrthoFinder
EOD05386 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
EOD36557 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD38452 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
OT_07G04400.1 No alias Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... 0.04 OrthoFinder
OT_11G00460.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
PTI_04G04910.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
PTI_10G00070.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.03 OrthoFinder
PTI_10G02350.1 No alias Chromo domain; SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
PTI_12G00850.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.02 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.03 OrthoFinder
Sro154_g070270.1 Contig2716.g21905 ISWI chromatin-remodeling complex ATPase ISW2 0.02 OrthoFinder
TP05G00410.1 No alias SNF2-related, N-terminal domain; Bromodomain;... 0.04 OrthoFinder
TP07G00550.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
TP11G02170.1 No alias SNF2-related, N-terminal domain; Chromo domain;... 0.02 OrthoFinder
Transcript_contig_54441 54441 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0004s0442.1 32889776 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0011s0087.1 32895477 Domain of unknown function DUF3535; Helicase,... 0.01 OrthoFinder
Vocar.0015s0331.1 32898932 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
Vocar.0053s0011.1 32887634 Domain of unknown function DUF1086; Helicase,... 0.01 OrthoFinder
XM_002509111.1 MICPUN_62843, 62843 SNF2 super family 0.04 OrthoFinder
XM_003061140.1 MicpuC2_28265, 28265 SNF2 super family 0.01 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13581.1_8058 HaLaN_09499, GFH13581 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13582.1_8059 HaLaN_09500, GFH13582 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003574.1_cds_GFH27683.1_22160 HaLaN_26047, GFH27683 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003728.1_cds_GFH28065.1_22542 HaLaN_26485, GFH28065 Helicase ATP-binding domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57712.1_8459 PRW57712 CHROMATIN REMODELING 5 isoform B 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492942.1_2678 KAA8492942 TATA-binding protein-associated factor 0.01 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492149.1_5332 KAA8492149 Chromodomain-helicase-DNA-binding protein 6 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1605 1706
IPR000330 SNF2_N 1212 1516
IPR022707 Mot1_central_dom 858 950
No external refs found!