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  5. Sro1718_g293350.1

Sro1718_g293350.1 (Contig3856.g29683)


Aliases : Contig3856.g29683

Description : Tubulin alpha chain (Fragment)


Gene families : OG_01_0000699 (OrthoFinder) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1718_g293350.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000237.34 tig00000237_g20483.t1 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder
Cpa|evm.model.tig00000404.34 tig00000404_g397.t1 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder
Cre03.g190950 30788226, TUA1 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.02 OrthoFinder
Cre04.g216850 30791599, TUA2 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.02 OrthoFinder
Cz07g00160.t1 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.01 OrthoFinder
Cz11g05030.t1 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.01 OrthoFinder
EOD12704 No alias Alpha-tubulin [Ensembl]. 0.04 OrthoFinder
EOD12836 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
EOD15554 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
EOD22056 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.03 OrthoFinder
EOD29196 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
EOD38024 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
SymbC1.scaffold1680.5 1680.5 Tubulin/FtsZ, GTPase domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58863 58863 Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.01 OrthoFinder
XM_002506021.1 MICPUN_92378, 92378 Alpha tubulin 1 (TUA1) 0.02 OrthoFinder
XM_002507964.1 MICPUN_94939, 94939 Alpha tubulin 2 (TUA2) 0.02 OrthoFinder
lcl|BLLF01000929.1_cds_GFH15979.1_10456 HaLaN_12318, GFH15979 Tubulin alpha chain 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58554.1_7753 PRW58554 Tubulin alpha chain 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495544.1_1542 KAA8495544 Tubulin alpha-2 chain 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 213
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 263 392
No external refs found!