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  5. Sro1655_g289020.1

Sro1655_g289020.1 (Contig2908.g23148)


Aliases : Contig2908.g23148

Description : Stimulation factor subunit 2 tau variant


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1655_g289020.1
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.146 tig00020553_g10637.t1 Serine/arginine-rich splicing factor SR45a... 0.03 OrthoFinder
Cre01.g024200 30788323 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.03 OrthoFinder
Cre06.g288750 30780037, CBP20 No description available 0.02 OrthoFinder
Cre17.g729150 30782801 No description available 0.01 OrthoFinder
Dusal.0028s00033.1 33198481 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Dusal.0108s00022.1 33189529 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD31364 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD36218 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD37462 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
PTI_05G02190.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold958.4 958.4 Zinc finger, CCCH-type; RNA recognition motif domain... 0.01 OrthoFinder
Transcript_contig_3626 3626 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0007s0376.1 32887918 Cleavage stimulation factor subunit 2, hinge domain; RNA... 0.01 OrthoFinder
lcl|BLLF01000062.1_cds_GFH06898.1_1375 HaLaN_01614, GFH06898 RRM domain-containing protein 0.01 OrthoFinder
lcl|BLLF01000187.1_cds_GFH08821.1_3298 HaLaN_03852, GFH08821 RRM domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56872.1_9478 PRW56872 RNA recognition motif-containing 0.01 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33883.1_2944 PRW33883 Serine arginine repetitive matrix 5-like isoform X2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004629 phospholipase C activity IEP Enrichment
MF GO:0004651 polynucleotide 5'-phosphatase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
CC GO:0008303 caspase complex IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010466 negative regulation of peptidase activity IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0010941 regulation of cell death IEP Enrichment
BP GO:0010951 negative regulation of endopeptidase activity IEP Enrichment
BP GO:0016032 viral process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0016255 attachment of GPI anchor to protein IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019079 viral genome replication IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0030162 regulation of proteolysis IEP Enrichment
CC GO:0030906 retromer, cargo-selective complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
CC GO:0042765 GPI-anchor transamidase complex IEP Enrichment
BP GO:0042981 regulation of apoptotic process IEP Enrichment
BP GO:0043066 negative regulation of apoptotic process IEP Enrichment
BP GO:0043067 regulation of programmed cell death IEP Enrichment
BP GO:0043069 negative regulation of programmed cell death IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045861 negative regulation of proteolysis IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051248 negative regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051346 negative regulation of hydrolase activity IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0052547 regulation of peptidase activity IEP Enrichment
BP GO:0052548 regulation of endopeptidase activity IEP Enrichment
BP GO:0060548 negative regulation of cell death IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
CC GO:0071986 Ragulator complex IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0098518 polynucleotide phosphatase activity IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Enrichment
BP GO:2000117 negative regulation of cysteine-type endopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 28 98
IPR025742 CSTF2_hinge 138 200
IPR026896 CSTF_C 296 327
No external refs found!