1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro1577_g283580.1

Sro1577_g283580.1 (Contig4524.g33888)


Aliases : Contig4524.g33888

Description : Protein ClpB


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1577_g283580.1
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
Cre02.g090850 30785159, CLPB3 External stimuli response.temperature.Hsp... 0.01 OrthoFinder
PTI_17G01580.1 No alias ClpA/ClpB, AAA lid domain; Clp, N-terminal; ATPase,... 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491801.1_4809 KAA8491801 Chaperone protein ClpB 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 96 146
IPR004176 Clp_R_dom 17 69
IPR041546 ClpA/ClpB_AAA_lid 343 445
IPR003959 ATPase_AAA_core 204 336
IPR019489 Clp_ATPase_C 779 859
IPR003959 ATPase_AAA_core 607 772
No external refs found!