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  5. Sro1514_g278930.1

Sro1514_g278930.1 (Contig2561.g20813)


Aliases : Contig2561.g20813

Description : Putative E3 ubiquitin-protein ligase LIN


Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Sro1514_g278930.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.73 tig00020554_g10853.t1 No description available 0.02 OrthoFinder
EOD29934 No alias U box domain [Interproscan]. 0.02 OrthoFinder
OT_09G00020.1 No alias U box domain [Interproscan]. 0.02 OrthoFinder
Sro121_g058770.1 Contig1619.g14631 U-box domain-containing protein 0.03 OrthoFinder
Sro1371_g267060.1 Contig1338.g12336 Putative E3 ubiquitin-protein ligase LIN 0.04 OrthoFinder
Sro1511_g278700.1 Contig2369.g19497 E3 ubiquitin-protein ligase 0.03 OrthoFinder
Sro179_g078560.1 Contig4117.g31448 Putative E3 ubiquitin-protein ligase LIN 0.07 OrthoFinder
Sro2403_g326410.1 Contig1134.g10895 U-box domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58217.1_7785 PRW58217 U box domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 115 185
No external refs found!