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  5. Sro1457_g274300.1

Sro1457_g274300.1 (Contig749.g8546)


Aliases : Contig749.g8546

Description : Splicing factor 3B subunit 4


Gene families : OG_01_0002452 (OrthoFinder) Phylogenetic Tree(s): OG0002452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1457_g274300.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001029.19 tig00001029_g6418.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder
Cre06.g254800 30778948 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60028.1_6237 PRW60028 Splicing factor 3B subunit 4 isoform X1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 181
IPR000504 RRM_dom 16 86
No external refs found!