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  5. Sro1228_g254360.1

Sro1228_g254360.1 (Contig2695.g21737)


Aliases : Contig2695.g21737

Description : Proteasome subunit beta type-1


Gene families : OG_01_0002875 (OrthoFinder) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1228_g254360.1
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001339.5 tig00001339_g8261.t1 Protein degradation.26S proteasome.20S core... 0.07 OrthoFinder
Cre26.g756797 30778304 Protein degradation.26S proteasome.20S core... 0.21 OrthoFinder
Cz09g32010.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.14 OrthoFinder
Dusal.0321s00008.1 33203157 Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
EOD11720 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.11 OrthoFinder
EOD17403 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.11 OrthoFinder
OT_08G04050.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
PTI_00G00010.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.16 OrthoFinder
TP01G00130.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.15 OrthoFinder
Transcript_contig_56013 56013 Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
Vocar.0014s0257.1 32888681 Proteasome, subunit alpha/beta [Interproscan]. 0.04 OrthoFinder
XM_002501730.1 MICPUN_81202, 81202 Proteasome, subunit alpha/beta [Interproscan]. 0.13 OrthoFinder
XM_003058479.1 MicpuC2_17183, 17183 Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01002663.1_cds_GFH24902.1_19379 HaLaN_22779, GFH24902 Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01002996.1_cds_GFH26034.1_20511 HaLaN_24108, GFH26034 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20914.1_5022 PRW20914 Proteasome subunit beta type-1 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494675.1_3205 KAA8494675 Proteasome subunit beta type-1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 52 240
No external refs found!