Sro1224_g253960.3


Description : Pentatricopeptide repeat [Interproscan].


Gene families : OG_01_0003934 (OrthoFinder) Phylogenetic Tree(s): OG0003934_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1224_g253960.3
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
EOD25906 No alias Pentatricopeptide repeat; Pentacotripeptide-repeat... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495628.1_1626 KAA8495628 Pentatricopeptide repeat-containing protein 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491929.1_4937 KAA8491929 Pentatricopeptide repeat-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 132 161
IPR002885 Pentatricopeptide_repeat 163 208
IPR002885 Pentatricopeptide_repeat 2 67
IPR002885 Pentatricopeptide_repeat 284 344
No external refs found!