Sro1192_g251000.1 (Contig331.g4396)

Aliases : Contig331.g4396

Description : Integrase, catalytic domain [Interproscan].

Gene families : OG_01_0004747 (OrthoFinder) Phylogenetic Tree(s): OG0004747_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro1192_g251000.1
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
Sro1179_g249560.1	Contig1870.g16341	Hypothetical protein	0.1	OrthoFinder
Sro1179_g249570.1	Contig1870.g16342	Integrase, catalytic domain [Interproscan].	0.08	OrthoFinder
Sro170_g075500.1	Contig2525.g20623	Hypothetical protein	0.05	OrthoFinder
Sro35_g022230.1	Contig3323.g26100	Integrase, catalytic domain [Interproscan].	0.03	OrthoFinder
Sro3890_g351730.1	Contig1160.g11078	Hypothetical protein	0.07	OrthoFinder
Sro4699_g354490.1	Contig2139.g18000	Hypothetical protein	0.07	OrthoFinder
Sro820_g207250.1	Contig34.g207	Hypothetical protein	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0004089	carbonate dehydratase activity	IEP	Enrichment
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Enrichment
MF	GO:0016836	hydro-lyase activity	IEP	Enrichment
MF	GO:0019899	enzyme binding	IEP	Enrichment
MF	GO:0019900	kinase binding	IEP	Enrichment
MF	GO:0019901	protein kinase binding	IEP	Enrichment
BP	GO:0030638	polyketide metabolic process	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002104	Integrase_catalytic	467	525

External Links

No external refs found!