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Aliases : Contig2345.g19273
Description : Probable histone deacetylase 1-B
Gene families : OG_01_0000505 (OrthoFinder) Phylogenetic Tree(s): OG0000505_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro1154_g247170.1 | |
| Cluster | HCCA: Cluster_270 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000197.8 | tig00000197_g15688.t1 | Histone deacetylase 6 OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
| EOD03651 | No alias | Histone deacetylase domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD14941 | No alias | Histone deacetylase 1 [Ensembl]. | 0.02 | OrthoFinder | |
| OT_02G01410.1 | No alias | Histone deacetylase domain [Interproscan]. | 0.01 | OrthoFinder | |
| Transcript_contig_53973 | 53973 | Zinc finger, GATA-type; Histone deacetylase domain... | 0.01 | OrthoFinder | |
| Vocar.0002s0433.1 | 32890549 | Histone deacetylase domain [Interproscan]. | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004177 | aminopeptidase activity | IEP | Enrichment |
| CC | GO:0005783 | endoplasmic reticulum | IEP | Enrichment |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006605 | protein targeting | IEP | Enrichment |
| MF | GO:0008238 | exopeptidase activity | IEP | Enrichment |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Enrichment |
| MF | GO:0010181 | FMN binding | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016853 | isomerase activity | IEP | Enrichment |
| MF | GO:0016854 | racemase and epimerase activity | IEP | Enrichment |
| MF | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives | IEP | Enrichment |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Enrichment |
| BP | GO:0033365 | protein localization to organelle | IEP | Enrichment |
| BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0045047 | protein targeting to ER | IEP | Enrichment |
| BP | GO:0070070 | proton-transporting V-type ATPase complex assembly | IEP | Enrichment |
| BP | GO:0070071 | proton-transporting two-sector ATPase complex assembly | IEP | Enrichment |
| BP | GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | IEP | Enrichment |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Enrichment |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Enrichment |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Enrichment |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023801 | His_deacetylse_dom | 24 | 315 |
| No external refs found! |