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  5. Sro1116_g242890.1

Sro1116_g242890.1 (Contig365.g4929)


Aliases : Contig365.g4929

Description : Retinoblastoma-associated protein


Gene families : OG_01_0004846 (OrthoFinder) Phylogenetic Tree(s): OG0004846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1116_g242890.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
PTI_09G03370.1 No alias Retinoblastoma-associated protein, B-box;... 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494922.1_3452 KAA8494922 Retinoblastoma-associated protein, A-box;... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0051726 regulation of cell cycle IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002720 RB_A 691 874
IPR002719 RB_B 979 1117
No external refs found!