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  5. Cpa|evm.model.tig00000215.35

Cpa|evm.model.tig00000215.35 (tig00000215_g18570.t1)


Aliases : tig00000215_g18570.t1

Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000215.35
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cz05g07080.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD09087 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
OT_18G01660.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Sro1790_g297740.1 Contig4724.g35072 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic 0.01 OrthoFinder
Sro335_g119970.1 Contig3868.g29754 DExH-box ATP-dependent RNA helicase DExH1 0.02 OrthoFinder
SymbC1.scaffold1401.13 1401.13 DEAD/DEAH box helicase domain; Transcription factor IIS,... 0.01 OrthoFinder
lcl|BLLF01003135.1_cds_GFH26457.1_20934 HaLaN_24609, GFH26457 Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
CC GO:0008303 caspase complex IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
BP GO:0016255 attachment of GPI anchor to protein IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
CC GO:0042765 GPI-anchor transamidase complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 821 923
IPR001650 Helicase_C 347 472
No external refs found!