1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro102_g052160.1

Sro102_g052160.1 (Contig319.g4260)


Aliases : Contig319.g4260

Description : Tubulin alpha chain (Fragment)


Gene families : OG_01_0000699 (OrthoFinder) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro102_g052160.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000237.34 tig00000237_g20483.t1 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder
Cpa|evm.model.tig00000404.34 tig00000404_g397.t1 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder
Cre03.g190950 30788226, TUA1 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.02 OrthoFinder
Cre04.g216850 30791599, TUA2 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder
Cz07g00160.t1 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.01 OrthoFinder
EOD12704 No alias Alpha-tubulin [Ensembl]. 0.03 OrthoFinder
EOD12836 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
EOD15554 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
EOD22056 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.02 OrthoFinder
EOD29196 No alias Alpha-tubulin [Ensembl]. 0.02 OrthoFinder
EOD38024 No alias Alpha-tubulin [Ensembl]. 0.01 OrthoFinder
SymbC1.scaffold1680.5 1680.5 Tubulin/FtsZ, GTPase domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58863 58863 Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.01 OrthoFinder
XM_002506021.1 MICPUN_92378, 92378 Alpha tubulin 1 (TUA1) 0.02 OrthoFinder
XM_002507964.1 MICPUN_94939, 94939 Alpha tubulin 2 (TUA2) 0.01 OrthoFinder
lcl|BLLF01000929.1_cds_GFH15979.1_10456 HaLaN_12318, GFH15979 Tubulin alpha chain 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495544.1_1542 KAA8495544 Tubulin alpha-2 chain 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 264 393
IPR003008 Tubulin_FtsZ_GTPase 3 214
No external refs found!