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  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000044.1_cds_KAA8490227.1_6079

lcl|VRMN01000044.1_cds_KAA8490227.1_6079 (KAA8490227)


Aliases : KAA8490227

Description : Hypothetical protein


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000044.1_cds_KAA8490227.1_6079

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499398.1_8351 KAA8499398 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499399.1_8352 KAA8499399 Reverse transcriptase domain [Interproscan]. 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499403.1_8356 KAA8499403 Reverse transcriptase domain [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497468.1_1197 KAA8497468 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496269.1_2267 KAA8496269 Retrotransposable element 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 KAA8494359 Retrovirus-related Pol polyprotein from type-1... 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494360.1_2890 KAA8494360 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 KAA8494358 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493103.1_2839 KAA8493103 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 KAA8492708 Copia protein 0.04 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 KAA8490703 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490705.1_5961 KAA8490705 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490574.1_6047 KAA8490574 RNA-directed DNA polymerase from mobile element jockey 0.05 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 KAA8490408 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490336.1_5678 KAA8490336 RNA-directed DNA polymerase from mobile element jockey 0.04 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490337.1_5679 KAA8490337 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490339.1_5681 KAA8490339 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490257.1_2416 KAA8490257 Reverse transcriptase domain [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 KAA8490243 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490237.1_6104 KAA8490237 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490239.1_6106 KAA8490239 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490232.1_2422 KAA8490232 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490234.1_2424 KAA8490234 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490219.1_4683 KAA8490219 Reverse transcriptase domain [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.07 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490213.1_5698 KAA8490213 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490214.1_5699 KAA8490214 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490210.1_4223 KAA8490210 Hypothetical protein 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!