1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000043.1_cds_KAA8490234.1_2424

lcl|VRMN01000043.1_cds_KAA8490234.1_2424 (KAA8490234)


Aliases : KAA8490234

Description : Hypothetical protein


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000043.1_cds_KAA8490234.1_2424
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499398.1_8351 KAA8499398 Retrotransposable element 0.16 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499399.1_8352 KAA8499399 Reverse transcriptase domain [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499403.1_8356 KAA8499403 Reverse transcriptase domain [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497468.1_1197 KAA8497468 Reverse transcriptase domain [Interproscan]. 0.17 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497470.1_1199 KAA8497470 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496268.1_2266 KAA8496268 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 KAA8494359 Retrovirus-related Pol polyprotein from type-1... 0.16 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494360.1_2890 KAA8494360 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 KAA8494358 Retrotransposable element 0.14 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493457.1_9758 KAA8493457 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492026.1_5209 KAA8492026 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 KAA8490703 Retrotransposable element 0.21 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490337.1_5679 KAA8490337 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490257.1_2416 KAA8490257 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.28 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 KAA8490227 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490219.1_4683 KAA8490219 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.12 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490213.1_5698 KAA8490213 Retrotransposable element 0.12 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 KAA8490211 Retrotransposable element 0.19 OrthoFinder
lcl|VRMN01000049.1_cds_KAA8490206.1_5939 KAA8490206 Hypothetical protein 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment

No InterPro domains available for this sequence

No external refs found!