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  5. lcl|VRMN01000041.1_cds_KAA8490241.1_5205

lcl|VRMN01000041.1_cds_KAA8490241.1_5205 (KAA8490241)


Aliases : KAA8490241

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Type Description Actions
Neighborhood HRR: lcl|VRMN01000041.1_cds_KAA8490241.1_5205
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491827.1_4835 KAA8491827 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 67 160
IPR041373 RT_RNaseH 805 904
IPR001878 Znf_CCHC 231 247
IPR000477 RT_dom 553 711
IPR041588 Integrase_H2C2 985 1043
IPR001584 Integrase_cat-core 1065 1173
No external refs found!