lcl|VRMN01000038.1_cds_KAA8490259.1_2418 (KAA8490259)

Aliases : KAA8490259

Description : Transposable element Tc3 transposase

Gene families : OG_01_0001332 (OrthoFinder) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000038.1_cds_KAA8490259.1_2418
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497488.1_6441	KAA8497488	Transposable element Tcb2 transposase	0.09	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495318.1_1316	KAA8495318	Transposable element Tc1 transposase	0.05	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494361.1_2891	KAA8494361	Transposable element Tcb2 transposase	0.05	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494427.1_2957	KAA8494427	Transposable element Tc3 transposase	0.13	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492299.1_5482	KAA8492299	Transposable element Tcb2 transposase	0.11	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491909.1_4917	KAA8491909	Transposable element Tc3 transposase	0.12	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491640.1_5108	KAA8491640	Transposable element Tc3 transposase	0.06	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491408.1_2409	KAA8491408	Transposable element Tc1 transposase	0.05	OrthoFinder
lcl\|VRMN01000020.1_cds_KAA8490656.1_4698	KAA8490656	Transposable element Tc1 transposase	0.1	OrthoFinder
lcl\|VRMN01000022.1_cds_KAA8490573.1_6046	KAA8490573	Transposable element Tc3 transposase	0.09	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006313	transposition, DNA-mediated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0032196	transposition	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Enrichment
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Enrichment
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Enrichment
BP	GO:0018142	protein-DNA covalent cross-linking	IEP	Enrichment
BP	GO:0018143	nucleic acid-protein covalent cross-linking	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR038717	Tc1-like_DDE_dom	180	334
IPR002492	Transposase_Tc1-like	104	171

External Links

No external refs found!