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  4. Sequence
  5. lcl|VRMN01000038.1_cds_KAA8490257.1_2416

lcl|VRMN01000038.1_cds_KAA8490257.1_2416 (KAA8490257)


Aliases : KAA8490257

Description : Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000038.1_cds_KAA8490257.1_2416
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000003.1_cds_KAA8496268.1_2266 KAA8496268 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496269.1_2267 KAA8496269 Retrotransposable element 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 KAA8496271 Hypothetical protein 0.17 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494360.1_2890 KAA8494360 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 KAA8494358 Retrotransposable element 0.16 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493457.1_9758 KAA8493457 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 KAA8492708 Copia protein 0.04 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492711.1_9404 KAA8492711 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492026.1_5209 KAA8492026 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490572.1_6045 KAA8490572 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 KAA8490408 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490337.1_5679 KAA8490337 Hypothetical protein 0.27 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.08 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490258.1_2417 KAA8490258 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 KAA8490243 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490235.1_6102 KAA8490235 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490237.1_6104 KAA8490237 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490239.1_6106 KAA8490239 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490234.1_2424 KAA8490234 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 KAA8490227 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 KAA8490222 Hypothetical protein 0.23 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490213.1_5698 KAA8490213 Retrotransposable element 0.25 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490210.1_4223 KAA8490210 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000049.1_cds_KAA8490206.1_5939 KAA8490206 Hypothetical protein 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 186 266
No external refs found!