lcl|VRMN01000037.1_cds_KAA8490263.1_6396 (KAA8490263)

Aliases : KAA8490263

Description : Copia protein

Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: lcl|VRMN01000037.1_cds_KAA8490263.1_6396
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497751.1_6704 KAA8497751 Copia protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499337.1_8290 KAA8499337 Copia protein 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493322.1_9623 KAA8493322 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 239 327
IPR013103 RVT_2 988 1218
IPR001584 Integrase_cat-core 643 737
No external refs found!