lcl|VRMN01000032.1_cds_KAA8490339.1_5681 (KAA8490339)


Aliases : KAA8490339

Description : Retrotransposable element


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000032.1_cds_KAA8490339.1_5681
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499398.1_8351 KAA8499398 Retrotransposable element 0.22 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499403.1_8356 KAA8499403 Reverse transcriptase domain [Interproscan]. 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496275.1_4 KAA8496275 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496268.1_2266 KAA8496268 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 KAA8496271 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 KAA8494359 Retrovirus-related Pol polyprotein from type-1... 0.16 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494360.1_2890 KAA8494360 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 KAA8494358 Retrotransposable element 0.19 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 KAA8492708 Copia protein 0.12 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492295.1_5478 KAA8492295 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490572.1_6045 KAA8490572 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 KAA8490413 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 KAA8490408 Hypothetical protein 0.24 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490410.1_6099 KAA8490410 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490336.1_5678 KAA8490336 RNA-directed DNA polymerase from mobile element jockey 0.08 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490337.1_5679 KAA8490337 Hypothetical protein 0.22 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.12 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 KAA8490243 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490235.1_6102 KAA8490235 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 KAA8490227 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490219.1_4683 KAA8490219 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 KAA8490222 Hypothetical protein 0.19 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.12 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490214.1_5699 KAA8490214 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 KAA8490211 Retrotransposable element 0.12 OrthoFinder
lcl|VRMN01000049.1_cds_KAA8490206.1_5939 KAA8490206 Hypothetical protein 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 508 735
No external refs found!