Aliases : KAA8490336
Description : RNA-directed DNA polymerase from mobile element jockey
Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: lcl|VRMN01000032.1_cds_KAA8490336.1_5678 | |
Cluster | HCCA: Cluster_31 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
lcl|VRMN01000001.1_cds_KAA8499399.1_8352 | KAA8499399 | Reverse transcriptase domain [Interproscan]. | 0.05 | OrthoFinder | |
lcl|VRMN01000002.1_cds_KAA8496272.1_1 | KAA8496272 | Retrotransposable element | 0.11 | OrthoFinder | |
lcl|VRMN01000002.1_cds_KAA8497467.1_1196 | KAA8497467 | Hypothetical protein | 0.06 | OrthoFinder | |
lcl|VRMN01000002.1_cds_KAA8497468.1_1197 | KAA8497468 | Reverse transcriptase domain [Interproscan]. | 0.04 | OrthoFinder | |
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 | KAA8496271 | Hypothetical protein | 0.05 | OrthoFinder | |
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 | KAA8494359 | Retrovirus-related Pol polyprotein from type-1... | 0.12 | OrthoFinder | |
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 | KAA8494358 | Retrotransposable element | 0.11 | OrthoFinder | |
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 | KAA8492708 | Copia protein | 0.06 | OrthoFinder | |
lcl|VRMN01000009.1_cds_KAA8492711.1_9404 | KAA8492711 | Retrotransposable element | 0.08 | OrthoFinder | |
lcl|VRMN01000010.1_cds_KAA8492026.1_5209 | KAA8492026 | Hypothetical protein | 0.04 | OrthoFinder | |
lcl|VRMN01000010.1_cds_KAA8492295.1_5478 | KAA8492295 | Hypothetical protein | 0.05 | OrthoFinder | |
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 | KAA8490703 | Retrotransposable element | 0.07 | OrthoFinder | |
lcl|VRMN01000019.1_cds_KAA8490705.1_5961 | KAA8490705 | Hypothetical protein | 0.04 | OrthoFinder | |
lcl|VRMN01000022.1_cds_KAA8490572.1_6045 | KAA8490572 | Hypothetical protein | 0.04 | OrthoFinder | |
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 | KAA8490413 | Retrotransposable element | 0.08 | OrthoFinder | |
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 | KAA8490408 | Hypothetical protein | 0.04 | OrthoFinder | |
lcl|VRMN01000032.1_cds_KAA8490339.1_5681 | KAA8490339 | Retrotransposable element | 0.08 | OrthoFinder | |
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 | KAA8490314 | Retrotransposable element | 0.07 | OrthoFinder | |
lcl|VRMN01000038.1_cds_KAA8490258.1_2417 | KAA8490258 | Hypothetical protein | 0.05 | OrthoFinder | |
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 | KAA8490261 | Hypothetical protein | 0.07 | OrthoFinder | |
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 | KAA8490248 | Hypothetical protein | 0.07 | OrthoFinder | |
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 | KAA8490243 | Hypothetical protein | 0.06 | OrthoFinder | |
lcl|VRMN01000042.1_cds_KAA8490235.1_6102 | KAA8490235 | Hypothetical protein | 0.05 | OrthoFinder | |
lcl|VRMN01000042.1_cds_KAA8490237.1_6104 | KAA8490237 | Hypothetical protein | 0.04 | OrthoFinder | |
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 | KAA8490227 | Hypothetical protein | 0.04 | OrthoFinder | |
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 | KAA8490228 | Hypothetical protein | 0.07 | OrthoFinder | |
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 | KAA8490222 | Hypothetical protein | 0.09 | OrthoFinder | |
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 | KAA8490223 | RNA-directed DNA polymerase from mobile element jockey | 0.09 | OrthoFinder | |
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 | KAA8490211 | Retrotransposable element | 0.14 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
BP | GO:0006310 | DNA recombination | IEP | Enrichment |
BP | GO:0006313 | transposition, DNA-mediated | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0015074 | DNA integration | IEP | Enrichment |
BP | GO:0032196 | transposition | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000477 | RT_dom | 227 | 421 |
No external refs found! |