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  5. lcl|VRMN01000031.1_cds_KAA8490368.1_5758

lcl|VRMN01000031.1_cds_KAA8490368.1_5758 (KAA8490368)


Aliases : KAA8490368

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000031.1_cds_KAA8490368.1_5758
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cz01g34080.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
Cz02g10210.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.04 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.05 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.04 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.05 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
Cz03g25170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.05 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.06 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz17g17250.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.05 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01001303.1_cds_GFH18455.1_12932 HaLaN_15267, GFH18455 Reverse transcriptase Ty1/copia-type domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499088.1_8041 KAA8499088 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499089.1_8042 KAA8499089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499574.1_8527 KAA8499574 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499575.1_8528 KAA8499575 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499576.1_8529 KAA8499576 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495516.1_1514 KAA8495516 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495517.1_1515 KAA8495517 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494984.1_3514 KAA8494984 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494985.1_3515 KAA8494985 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493112.1_9413 KAA8493112 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492487.1_9180 KAA8492487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491885.1_4893 KAA8491885 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491886.1_4894 KAA8491886 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491318.1_2319 KAA8491318 Copia protein 0.05 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491319.1_2320 KAA8491319 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491142.1_5770 KAA8491142 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490646.1_4688 KAA8490646 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490647.1_4689 KAA8490647 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490649.1_4691 KAA8490649 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490485.1_2847 KAA8490485 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490487.1_2849 KAA8490487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 498 551
IPR001584 Integrase_cat-core 569 683
IPR013103 RVT_2 945 1185
No external refs found!