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  5. lcl|VRMN01000031.1_cds_KAA8490360.1_5750

lcl|VRMN01000031.1_cds_KAA8490360.1_5750 (KAA8490360)


Aliases : KAA8490360

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000031.1_cds_KAA8490360.1_5750
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cz01g34080.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
Cz02g10210.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.04 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.04 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.04 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.05 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01001303.1_cds_GFH18455.1_12932 HaLaN_15267, GFH18455 Reverse transcriptase Ty1/copia-type domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499088.1_8041 KAA8499088 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499089.1_8042 KAA8499089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499574.1_8527 KAA8499574 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499575.1_8528 KAA8499575 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499576.1_8529 KAA8499576 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495516.1_1514 KAA8495516 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494984.1_3514 KAA8494984 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494985.1_3515 KAA8494985 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492487.1_9180 KAA8492487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491885.1_4893 KAA8491885 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491886.1_4894 KAA8491886 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491318.1_2319 KAA8491318 Copia protein 0.05 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491319.1_2320 KAA8491319 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490646.1_4688 KAA8490646 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490647.1_4689 KAA8490647 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490485.1_2847 KAA8490485 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490487.1_2849 KAA8490487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.19 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 450 504
IPR001584 Integrase_cat-core 522 636
No external refs found!