lcl|VRMN01000030.1_cds_KAA8490381.1_3738 (KAA8490381)

Aliases : KAA8490381

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000030.1_cds_KAA8490381.1_3738
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498456.1_7409	KAA8498456	Retrovirus-related Pol polyprotein from transposon 17.6	0.08	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496915.1_644	KAA8496915	Hypothetical protein	0.06	OrthoFinder
lcl\|VRMN01000017.1_cds_KAA8491006.1_6209	KAA8491006	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490611.1_5710	KAA8490611	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490462.1_6408	KAA8490462	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Enrichment
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Enrichment
BP	GO:0018142	protein-DNA covalent cross-linking	IEP	Enrichment
BP	GO:0018143	nucleic acid-protein covalent cross-linking	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041373	RT_RNaseH	982	1082
IPR001878	Znf_CCHC	375	390
IPR001584	Integrase_cat-core	1258	1368
IPR000477	RT_dom	710	870
IPR041588	Integrase_H2C2	1183	1242
IPR023780	Chromo_domain	1556	1603

External Links

No external refs found!