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  5. lcl|VRMN01000029.1_cds_KAA8490409.1_6098

lcl|VRMN01000029.1_cds_KAA8490409.1_6098 (KAA8490409)


Aliases : KAA8490409

Description : Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000029.1_cds_KAA8490409.1_6098
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499398.1_8351 KAA8499398 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499403.1_8356 KAA8499403 Reverse transcriptase domain [Interproscan]. 0.1 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496272.1_1 KAA8496272 Retrotransposable element 0.22 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496269.1_2267 KAA8496269 Retrotransposable element 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 KAA8496271 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494360.1_2890 KAA8494360 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494358.1_4222 KAA8494358 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493103.1_2839 KAA8493103 Retrotransposable element 0.12 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492711.1_9404 KAA8492711 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490337.1_5679 KAA8490337 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490235.1_6102 KAA8490235 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.07 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490214.1_5699 KAA8490214 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 KAA8490211 Retrotransposable element 0.15 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 443 523
No external refs found!