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  5. lcl|VRMN01000028.1_cds_KAA8490425.1_5048

lcl|VRMN01000028.1_cds_KAA8490425.1_5048 (KAA8490425)


Aliases : KAA8490425

Description : Transposon Ty2-B Gag-Pol polyprotein


Gene families : OG_01_0002363 (OrthoFinder) Phylogenetic Tree(s): OG0002363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000028.1_cds_KAA8490425.1_5048
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000004.1_cds_KAA8494497.1_3027 KAA8494497 Hypothetical protein 0.25 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494234.1_4098 KAA8494234 Hypothetical protein 0.22 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493087.1_2823 KAA8493087 Hypothetical protein 0.25 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491420.1_6230 KAA8491420 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491150.1_5778 KAA8491150 Hypothetical protein 0.17 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490922.1_6125 KAA8490922 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490414.1_5037 KAA8490414 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490340.1_5682 KAA8490340 Hypothetical protein 0.25 OrthoFinder
lcl|VRMN01000035.1_cds_KAA8490299.1_6220 KAA8490299 Hypothetical protein 0.13 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 2181 2388
No external refs found!