1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000026.1_cds_KAA8490466.1_6412

lcl|VRMN01000026.1_cds_KAA8490466.1_6412 (KAA8490466)


Aliases : KAA8490466

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000026.1_cds_KAA8490466.1_6412
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
lcl|BLLF01000622.1_cds_GFH13524.1_8001 HaLaN_09424, GFH13524 Reverse transcriptase/retrotransposon-derived protein,... 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498184.1_7137 KAA8498184 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498631.1_7584 KAA8498631 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499404.1_8357 KAA8499404 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496450.1_179 KAA8496450 Retrotransposon-derived protein PEG10 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496806.1_535 KAA8496806 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493854.1_4616 KAA8493854 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493298.1_9599 KAA8493298 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491424.1_6234 KAA8491424 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490923.1_6126 KAA8490923 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491004.1_6207 KAA8491004 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490460.1_6406 KAA8490460 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490383.1_3740 KAA8490383 Retrovirus-related Pol polyprotein from transposon 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 67 160
IPR041588 Integrase_H2C2 985 1043
IPR000477 RT_dom 553 711
IPR001584 Integrase_cat-core 1064 1173
IPR001878 Znf_CCHC 232 247
IPR041373 RT_RNaseH 805 904
No external refs found!