lcl|VRMN01000026.1_cds_KAA8490462.1_6408 (KAA8490462)

Aliases : KAA8490462

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000026.1_cds_KAA8490462.1_6408
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497591.1_6544	KAA8497591	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498456.1_7409	KAA8498456	Retrovirus-related Pol polyprotein from transposon 17.6	0.15	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499554.1_8507	KAA8499554	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496915.1_644	KAA8496915	Hypothetical protein	0.06	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495362.1_1360	KAA8495362	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493480.1_4242	KAA8493480	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493656.1_4418	KAA8493656	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492298.1_5481	KAA8492298	Transposon Ty3-I Gag-Pol polyprotein	0.12	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491986.1_4994	KAA8491986	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490611.1_5710	KAA8490611	Transposon Ty3-I Gag-Pol polyprotein	0.22	OrthoFinder
lcl\|VRMN01000025.1_cds_KAA8490489.1_2851	KAA8490489	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490381.1_3738	KAA8490381	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR041373	RT_RNaseH	982	1082
IPR001878	Znf_CCHC	375	390
IPR001584	Integrase_cat-core	1258	1368
IPR023780	Chromo_domain	1556	1603
IPR000477	RT_dom	710	870
IPR041588	Integrase_H2C2	1183	1242

External Links

No external refs found!