lcl|VRMN01000025.1_cds_KAA8490487.1_2849 (KAA8490487)

Aliases : KAA8490487

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94

Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000025.1_cds_KAA8490487.1_2849
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
Cz01g34150.t1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase...	0.03	OrthoFinder
Cz02g21060.t1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase;...	0.03	OrthoFinder
Cz02g21220.t1	No alias	Integrase, catalytic core; Reverse transcriptase,...	0.03	OrthoFinder
Cz02g21260.t1	No alias	Hypothetical protein	0.02	OrthoFinder
Cz02g21270.t1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase...	0.02	OrthoFinder
Cz03g25170.t1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase...	0.02	OrthoFinder
Cz03g25200.t1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase...	0.02	OrthoFinder
Cz12g13100.t1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase;...	0.02	OrthoFinder
Cz14g04110.t1	No alias	GAG-pre-integrase domain; Integrase, catalytic core...	0.03	OrthoFinder
Cz16g05080.t1	No alias	gag-polypeptide of LTR copia-type; Zinc finger,...	0.01	OrthoFinder
Cz17g17240.t1	No alias	Hypothetical protein	0.02	OrthoFinder
Cz17g17250.t1	No alias	Hypothetical protein	0.02	OrthoFinder
OT_19G00550.1	No alias	Reverse transcriptase, RNA-dependent DNA polymerase...	0.02	OrthoFinder
UNPLg00808.t1	No alias	Hypothetical protein	0.01	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499088.1_8041	KAA8499088	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499574.1_8527	KAA8499574	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.11	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499576.1_8529	KAA8499576	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.11	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496538.1_267	KAA8496538	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.03	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495517.1_1515	KAA8495517	Hypothetical protein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494984.1_3514	KAA8494984	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.01	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493111.1_9412	KAA8493111	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.08	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493112.1_9413	KAA8493112	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492487.1_9180	KAA8492487	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.11	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492347.1_5530	KAA8492347	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.01	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491886.1_4894	KAA8491886	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.11	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491320.1_2321	KAA8491320	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000020.1_cds_KAA8490649.1_4691	KAA8490649	Hypothetical protein	0.03	OrthoFinder
lcl\|VRMN01000020.1_cds_KAA8490657.1_4699	KAA8490657	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490359.1_5749	KAA8490359	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.04	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490360.1_5750	KAA8490360	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490368.1_5758	KAA8490368	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004806	triglyceride lipase activity	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	569	683
IPR025724	GAG-pre-integrase_dom	498	551
IPR013103	RVT_2	945	1185

External Links

No external refs found!

lcl|VRMN01000025.1_cds_KAA8490487.1_2849 (KAA8490487)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation