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Aliases : KAA8490481
Description : Cleavage and polyadenylation specificity factor subunit 3
Gene families : OG_01_0001543 (OrthoFinder) Phylogenetic Tree(s): OG0001543_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000025.1_cds_KAA8490481.1_2843 | |
| Cluster | HCCA: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre02.g080100 | 30785663 | Cleavage and polyadenylation specificity factor subunit... | 0.02 | OrthoFinder | |
| Sro2619_g332830.1 | Contig1346.g12374 | Endoribonuclease YSH1 | 0.01 | OrthoFinder | |
| XM_002508759.1 | MICPUN_85708, 85708 | Beta-Casp domain; Pre-mRNA 3'-end-processing... | 0.02 | OrthoFinder | |
| lcl|BLLF01001223.1_cds_GFH17924.1_12401 | HaLaN_14649, GFH17924 | Beta-Casp domain [Interproscan]. | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| CC | GO:0000439 | transcription factor TFIIH core complex | IEP | Enrichment |
| MF | GO:0001671 | ATPase activator activity | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004651 | polynucleotide 5'-phosphatase activity | IEP | Enrichment |
| BP | GO:0006281 | DNA repair | IEP | Enrichment |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Enrichment |
| BP | GO:0006302 | double-strand break repair | IEP | Enrichment |
| BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Enrichment |
| BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | Enrichment |
| BP | GO:0006950 | response to stress | IEP | Enrichment |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| MF | GO:0010181 | FMN binding | IEP | Enrichment |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| BP | GO:0017013 | protein flavinylation | IEP | Enrichment |
| MF | GO:0017069 | snRNA binding | IEP | Enrichment |
| MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
| CC | GO:0030173 | integral component of Golgi membrane | IEP | Enrichment |
| MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
| CC | GO:0031228 | intrinsic component of Golgi membrane | IEP | Enrichment |
| CC | GO:0031300 | intrinsic component of organelle membrane | IEP | Enrichment |
| CC | GO:0031301 | integral component of organelle membrane | IEP | Enrichment |
| BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
| MF | GO:0060590 | ATPase regulator activity | IEP | Enrichment |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Enrichment |
| MF | GO:0098518 | polynucleotide phosphatase activity | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| No external refs found! |