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  5. lcl|VRMN01000023.1_cds_KAA8490545.1_5911

lcl|VRMN01000023.1_cds_KAA8490545.1_5911 (KAA8490545)


Aliases : KAA8490545

Description : 40S ribosomal protein S28


Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000023.1_cds_KAA8490545.1_5911
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.27 tig00000194_g14753.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder
Cre12.g510450 30792329, RPS28 Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder
Cz13g13220.t1 No alias Ribosomal protein S28e [Interproscan]. 0.06 OrthoFinder
EOD20419 No alias Ribosomal protein S28e [Interproscan]. 0.11 OrthoFinder
EOD23634 No alias Ribosomal protein S28e [Interproscan]. 0.11 OrthoFinder
OT_07G03760.1 No alias Ribosomal protein S28e [Interproscan]. 0.06 OrthoFinder
PTI_26G01600.1 No alias Ribosomal protein S28e [Interproscan]. 0.05 OrthoFinder
Sro2078_g313630.1 Contig3499.g27144 40S ribosomal protein S28 0.24 OrthoFinder
TP24G00120.1 No alias Ribosomal protein S28e [Interproscan]. 0.06 OrthoFinder
Vocar.0016s0208.1 32898111 Ribosomal protein S28e [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 3 52
No external refs found!