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  5. lcl|VRMN01000023.1_cds_KAA8490538.1_5904

lcl|VRMN01000023.1_cds_KAA8490538.1_5904 (KAA8490538)


Aliases : KAA8490538

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000023.1_cds_KAA8490538.1_5904
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Cz02g03020.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.02 OrthoFinder
Cz02g27010.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.02 OrthoFinder
Cz02g41150.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.05 OrthoFinder
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.05 OrthoFinder
Cz05g14160.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.04 OrthoFinder
Cz06g10270.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.02 OrthoFinder
Cz06g11150.t1 No alias Reverse transcriptase, RNase H-like domain; Integrase... 0.04 OrthoFinder
Cz11g01040.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz13g09240.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.02 OrthoFinder
Cz15g18080.t1 No alias Chromo domain [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01001218.1_cds_GFH17889.1_12366 HaLaN_14611, GFH17889 Reverse transcriptase, RNase H-like domain; Reverse... 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497473.1_6426 KAA8497473 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498172.1_7125 KAA8498172 Transposon Ty3-G Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500031.1_8984 KAA8500031 Transposon Tf2-6 polyprotein 0.09 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496807.1_536 KAA8496807 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497381.1_1110 KAA8497381 Transposon Ty3-I Gag-Pol polyprotein 0.13 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494620.1_3150 KAA8494620 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494622.1_3152 KAA8494622 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495182.1_3712 KAA8495182 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495185.1_3715 KAA8495185 Transposon Ty3-I Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494005.1_3869 KAA8494005 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494327.1_4191 KAA8494327 Transposon Ty3-G Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493391.1_9692 KAA8493391 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493427.1_9728 KAA8493427 Integrase, catalytic core [Interproscan]. 0.09 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492973.1_2709 KAA8492973 Transposon Ty3-G Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491610.1_5078 KAA8491610 Retrovirus-related Pol polyprotein from transposon 0.09 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491611.1_5079 KAA8491611 Retrovirus-related Pol polyprotein from transposon 17.6 0.09 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491326.1_2327 KAA8491326 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491220.1_5848 KAA8491220 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490790.1_5562 KAA8490790 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490463.1_6409 KAA8490463 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490242.1_5206 KAA8490242 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 334 349
IPR041588 Integrase_H2C2 1184 1242
IPR000477 RT_dom 708 868
IPR041373 RT_RNaseH 978 1077
IPR001584 Integrase_cat-core 1257 1367
No external refs found!