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  4. Sequence
  5. lcl|VRMN01000022.1_cds_KAA8490576.1_6049

lcl|VRMN01000022.1_cds_KAA8490576.1_6049 (KAA8490576)


Aliases : KAA8490576

Description : Copia protein


Gene families : OG_01_0001103 (OrthoFinder) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000022.1_cds_KAA8490576.1_6049
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000006.1_cds_KAA8493479.1_4241 KAA8493479 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493483.1_4245 KAA8493483 Transposon Ty1-BL Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493209.1_9510 KAA8493209 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491013.1_9770 KAA8491013 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490783.1_6039 KAA8490783 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490613.1_5712 KAA8490613 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490614.1_5713 KAA8490614 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490624.1_5723 KAA8490624 Transposon Ty1-GR2 Gag-Pol polyprotein 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 1126 1329
No external refs found!