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  5. lcl|VRMN01000022.1_cds_KAA8490573.1_6046

lcl|VRMN01000022.1_cds_KAA8490573.1_6046 (KAA8490573)


Aliases : KAA8490573

Description : Transposable element Tc3 transposase


Gene families : OG_01_0001332 (OrthoFinder) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000022.1_cds_KAA8490573.1_6046
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497488.1_6441 KAA8497488 Transposable element Tcb2 transposase 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495318.1_1316 KAA8495318 Transposable element Tc1 transposase 0.18 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494361.1_2891 KAA8494361 Transposable element Tcb2 transposase 0.1 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492385.1_9078 KAA8492385 Transposable element Tc1 transposase 0.17 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492299.1_5482 KAA8492299 Transposable element Tcb2 transposase 0.18 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491640.1_5108 KAA8491640 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491408.1_2409 KAA8491408 Transposable element Tc1 transposase 0.18 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490656.1_4698 KAA8490656 Transposable element Tc1 transposase 0.16 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490404.1_6093 KAA8490404 Transposable element Tcb2 transposase 0.09 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490361.1_5751 KAA8490361 Transposable element Tc1 transposase 0.11 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490362.1_5752 KAA8490362 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490259.1_2418 KAA8490259 Transposable element Tc3 transposase 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 180 334
IPR002492 Transposase_Tc1-like 104 171
No external refs found!