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  5. lcl|VRMN01000021.1_cds_KAA8490611.1_5710

lcl|VRMN01000021.1_cds_KAA8490611.1_5710 (KAA8490611)


Aliases : KAA8490611

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000021.1_cds_KAA8490611.1_5710
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497591.1_6544 KAA8497591 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498456.1_7409 KAA8498456 Retrovirus-related Pol polyprotein from transposon 17.6 0.13 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499554.1_8507 KAA8499554 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493480.1_4242 KAA8493480 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493648.1_4410 KAA8493648 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493656.1_4418 KAA8493656 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492298.1_5481 KAA8492298 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491986.1_4994 KAA8491986 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491006.1_6209 KAA8491006 Transposon Ty3-I Gag-Pol polyprotein 0.22 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490489.1_2851 KAA8490489 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490462.1_6408 KAA8490462 Transposon Ty3-I Gag-Pol polyprotein 0.22 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490381.1_3738 KAA8490381 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR041373 RT_RNaseH 982 1082
IPR001878 Znf_CCHC 375 390
IPR001584 Integrase_cat-core 1258 1368
IPR000477 RT_dom 710 870
IPR023780 Chromo_domain 1556 1603
IPR041588 Integrase_H2C2 1183 1242
No external refs found!