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  5. lcl|VRMN01000019.1_cds_KAA8490774.1_6030

lcl|VRMN01000019.1_cds_KAA8490774.1_6030 (KAA8490774)


Aliases : KAA8490774

Description : Vegetative incompatibility protein HET-E-1


Gene families : OG_01_0002636 (OrthoFinder) Phylogenetic Tree(s): OG0002636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000019.1_cds_KAA8490774.1_6030
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.74 tig00000144_g9065.t1 Notchless protein homolog OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre01.g000600 30789603 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
EOD17778 No alias WD40 repeat; NLE [Interproscan]. 0.01 OrthoFinder
Transcript_contig_61415 61415 NLE [Interproscan]. 0.01 OrthoFinder
Vocar.0024s0249.1 32890532 WD40 repeat; NLE [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
BP GO:0051321 meiotic cell cycle IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 6 39
IPR001680 WD40_repeat 171 217
IPR001680 WD40_repeat 127 165
IPR001680 WD40_repeat 43 81
IPR001680 WD40_repeat 222 259
IPR001680 WD40_repeat 263 301
IPR001680 WD40_repeat 85 123
No external refs found!