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  5. lcl|VRMN01000019.1_cds_KAA8490757.1_6013

lcl|VRMN01000019.1_cds_KAA8490757.1_6013 (KAA8490757)


Aliases : KAA8490757

Description : Copia protein


Gene families : OG_01_0002924 (OrthoFinder) Phylogenetic Tree(s): OG0002924_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000019.1_cds_KAA8490757.1_6013
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497524.1_6477 KAA8497524 Copia protein 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496360.1_89 KAA8496360 Copia protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494660.1_3190 KAA8494660 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493869.1_4631 KAA8493869 Copia protein 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493870.1_4632 KAA8493870 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492076.1_5259 KAA8492076 Copia protein 0.2 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491350.1_2351 KAA8491350 Copia protein 0.11 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491245.1_5873 KAA8491245 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491246.1_5874 KAA8491246 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490756.1_6012 KAA8490756 Hypothetical protein 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 5 235
No external refs found!