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  5. lcl|VRMN01000019.1_cds_KAA8490747.1_6003

lcl|VRMN01000019.1_cds_KAA8490747.1_6003 (KAA8490747)


Aliases : KAA8490747

Description : Transposable element Tc3 transposase


Gene families : OG_01_0001874 (OrthoFinder) Phylogenetic Tree(s): OG0001874_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000019.1_cds_KAA8490747.1_6003
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497593.1_6546 KAA8497593 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499347.1_8300 KAA8499347 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499365.1_8318 KAA8499365 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499655.1_8608 KAA8499655 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496442.1_171 KAA8496442 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496539.1_268 KAA8496539 Transposable element Tc3 transposase 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495124.1_3654 KAA8495124 Transposable element Tc3 transposase 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493856.1_4618 KAA8493856 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492041.1_5224 KAA8492041 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492081.1_5264 KAA8492081 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492318.1_5501 KAA8492318 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491321.1_2322 KAA8491321 Transposable element Tcb2 transposase 0.12 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490369.1_5759 KAA8490369 Transposable element Tcb2 transposase 0.14 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 147 283
No external refs found!