lcl|VRMN01000017.1_cds_KAA8490931.1_6134 (KAA8490931)

Aliases : KAA8490931

Description : Transposable element Tc3 transposase

Gene families : OG_01_0003235 (OrthoFinder) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000017.1_cds_KAA8490931.1_6134
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497595.1_6548	KAA8497595	Transposable element Tc3 transposase	0.11	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499722.1_8675	KAA8499722	Transposable element Tc3 transposase	0.04	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496314.1_43	KAA8496314	Transposable element Tc3 transposase	0.11	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8496122.1_2120	KAA8496122	Transposable element Tc3 transposase	0.14	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494363.1_2893	KAA8494363	Transposable element Tc3 transposase	0.08	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495201.1_3731	KAA8495201	Transposable element Tc3 transposase	0.08	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8493093.1_2829	KAA8493093	Transposable element Tc3 transposase	0.04	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491638.1_5106	KAA8491638	Transposable element Tc3 transposase	0.06	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491651.1_5119	KAA8491651	Transposable element Tc3 transposase	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006313	transposition, DNA-mediated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0032196	transposition	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Enrichment
BP	GO:0018142	protein-DNA covalent cross-linking	IEP	Enrichment
BP	GO:0018143	nucleic acid-protein covalent cross-linking	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002492	Transposase_Tc1-like	72	136
IPR038717	Tc1-like_DDE_dom	180	297

External Links

No external refs found!