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  5. lcl|VRMN01000017.1_cds_KAA8490912.1_6115

lcl|VRMN01000017.1_cds_KAA8490912.1_6115 (KAA8490912)


Aliases : KAA8490912

Description : Peroxisome biogenesis factor 1


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000017.1_cds_KAA8490912.1_6115
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Sro387_g132160.1 Contig424.g5701 Spermatogenesis-associated protein 5-like protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005777 peroxisome IEA Interproscan
BP GO:0007031 peroxisome organization IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 884 1009
IPR003959 ATPase_AAA_core 563 690
IPR041569 AAA_lid_3 1072 1117
IPR015342 PEX-N_psi_beta-barrel 100 180
No external refs found!